Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_01680Hypothetical protein. (124 aa)    
Predicted Functional Partners:
Rta_01670
Candidate transporter.
       0.752
Rta_01690
Hypothetical protein.
       0.612
tctC-5
Candidate extracytoplasmic binding receptor.
 
     0.530
Rta_36530
Hypothetical protein.
  
     0.526
Rta_01760
Candidate 4-hydroxy-2-oxovalerate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.511
Rta_01770
Candidate OHED hydratase.
 
     0.509
panE
Candidate 2-dehydropantoate 2-reductase.
       0.482
Rta_01710
Candidate aldolase class II protein.
       0.470
Rta_29470
Hypothetical protein.
  
     0.451
Rta_01730
Hypothetical protein.
       0.443
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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