Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_01760Candidate 4-hydroxy-2-oxovalerate aldolase; Belongs to the HpcH/HpaI aldolase family. (271 aa)    
Predicted Functional Partners:
Rta_01770
Candidate OHED hydratase.
 
 0.999
hpcB
Candidate 3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.979
Rta_01780
5-carboxymethyl-2-hydroxymuconate delta-isomerase-like protein.
 
  
 0.959
gabD
Candidate succinate-semialdehyde dehydrogenase (NADP+).
  
 
 0.911
Rta_17120
4-oxalocrotonate decarboxylase-like protein.
 
  
 0.852
hpcC
Candidate 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.792
ilvD
Candidate Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.777
gudD
Candidate Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.747
Rta_01820
Candidate 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.745
Rta_01740
Pentachlorophenol 4-monooxygenase-like protein.
     
 0.727
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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