Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bcatCandidate Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (311 aa)    
Predicted Functional Partners:
leuA1
Alpha-IPM synthetase 1; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
 
 0.979
leuA
Alpha-IPM synthetase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
  
 0.975
bkdA2
Candidate 2-oxoisovalerate dehydrogenase, beta subunit.
   
 0.968
bkdA1
Candidate 2-oxoisovalerate dehydrogenase, alpha subunit.
   
 
 0.963
ilvD
Candidate Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 0.960
ilvD-3
Candidate dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 0.952
Rta_24050
Transaminase A.
  
 
 0.909
Rta_02410
Conserved hypothetical protein.
   
 
  0.900
gshA
Candidate gamma-glutamylcysteine synthetase (glutamate--cysteine ligase); Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
  0.900
Rta_01290
Candidate Threonine dehydratase catabolic (Threonine deaminase).
  
 0.876
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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