Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nudJConserved hypothetical protein; Belongs to the Nudix hydrolase family. NudJ subfamily. (162 aa)    
Predicted Functional Partners:
trmU
Candidate tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
    0.822
Rta_28190
Conserved hypothetical protein.
 
  
 0.570
Rta_02075
Candidate membrane protein.
       0.561
Rta_28570
Conserved hypothetical protein.
  
     0.508
Rta_19820
Candidate type 4 fimbrial biogenesis protein PilZ.
  
     0.492
pepP
Candidate Xaa-Pro aminopeptidase (X-Pro aminopeptidase); (Aminopeptidase P II) (APP-II) (Aminoacylproline aminopeptidase); Belongs to the peptidase M24B family.
 
   
 0.464
Rta_37070
Conserved hypothetical protein.
  
     0.452
cobD
Candidate membrane protein, distantly related to cobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
    0.430
Rta_09880
Candidate periplasmic protein.
  
     0.428
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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