Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_02160Transcriptional regulator, AraC family-like protein. (284 aa)    
Predicted Functional Partners:
Rta_02150
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
 
     0.775
Rta_02140
Protein-L-isoaspartate O-methyltransferase-like protein.
       0.692
mtnN
Candidate adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
     
 0.548
Rta_04030
Transcriptional regulator, DeoR family-like protein.
 
     0.541
Rta_27500
Transcriptional regulator, AraC family-like protein.
  
     0.510
Rta_00580
Transcriptional regulator, AraC family-like protein.
  
     0.476
Rta_27980
Candidate membrane protein.
  
     0.465
Rta_04050
Transcriptional regulator, AraC family-like protein.
  
     0.457
Rta_27990
Transcriptional regulator, XRE family-like protein.
  
    0.415
Rta_03960
Transcriptional regulator, AraC family-like protein.
  
     0.411
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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