Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_02380Hypothetical protein. (336 aa)    
Predicted Functional Partners:
Rta_30560
Conserved hypothetical protein.
 
     0.784
Rta_30550
Conserved hypothetical protein.
 
     0.701
proA
Candidate Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
       0.695
fdhB
Candidate formate dehydrogenase iron-sulfur subunit.
 
     0.639
fdhF
Candidate formate dehydrogenase large subunit (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.625
Rta_30480
Candidate formate dehydrogenase subunit C precursor.
 
     0.618
Rta_30570
Conserved hypothetical protein.
 
     0.618
Rta_02360
Conserved hypothetical protein.
       0.563
Rta_13250
Candidate ABC transporter probably involved in tungstate transport, periplasmic component.
  
     0.486
Rta_02350
Candidate Esterase/lipase.
 
     0.482
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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