Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_02500Candidate NADP-dependent alcohol dehydrogenase. (351 aa)    
Predicted Functional Partners:
adhC
Glutathione-dependent formaldehyde dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.940
Rta_01070
Hypothetical protein.
    
 0.940
Rta_23090
Aldehyde dehydrogenase (NAD+)-like protein; Belongs to the aldehyde dehydrogenase family.
  
 0.922
glpK
ATP:glycerol 3-phosphotransferase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.913
Rta_19890
Alcohol dehydrogenase (Aldehyde reductase)-like protein.
  
 
 0.702
Rta_37580
Alcohol dehydrogenase (Aldehyde reductase)-like protein.
  
 
 0.702
Rta_37850
Bifunctional protein : malic enzyme; phosphate acetyltransferase (phosphotransacetylase)-like protein; Belongs to the malic enzymes family.
  
  
 0.654
Rta_02495
Conserved hypothetical protein.
       0.536
Rta_27310
Threonine dehydrogenase and related Zn-dependent dehydrogenase-like protein.
 
 
 0.524
metE
Candidate Methylcobalamin:homocysteine methyltransferase (Methionine synthase).
     
 0.518
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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