Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_02530Candidate membrane protein. (229 aa)    
Predicted Functional Partners:
Rta_02630
Conserved hypothetical protein.
 
  
 0.957
Rta_02520
Candidate Acyl carrier protein.
 
     0.955
Rta_02540
Candidate acyl-coenzyme A synthetases/AMP-(fatty) acid ligase.
 
  
 0.955
Rta_02560
Conserved hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
   
 0.953
Rta_02550
Conserved hypothetical protein.
 
     0.951
Rta_02570
Candidate membrane protein.
 
     0.951
Rta_02620
Conserved hypothetical protein.
 
   
 0.949
Rta_02590
GlcNAc deacetylase, Carbohydrate Esterase Family 4-like protein.
 
     0.943
fabB
Candidate 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP synthase); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.935
Rta_02600
Candidate SAM-dependent methyltransferase.
 
     0.922
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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