Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Rta_02740Candidate lysine efflux permease. (214 aa)    
Predicted Functional Partners:
Rta_02750
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.914
Rta_01200
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.799
Rta_02760
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
     
 0.546
Rta_02770
Candidate membrane protein.
       0.536
Rta_27510
Conserved hypothetical protein.
  
    0.535
argS
Candidate Arginyl-tRNA synthetase.
       0.509
Rta_02790
Conserved hypothetical protein.
       0.499
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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