Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Rta_02850Conserved hypothetical protein. (140 aa)    
Predicted Functional Partners:
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
     0.864
Rta_02860
Conserved hypothetical protein.
 
     0.834
Rta_02820
Candidate ATP-binding component of an ABC transporter, unknown function.
       0.805
Rta_02840
N6-adenine-specific DNA methylase-like protein; Belongs to the methyltransferase superfamily.
       0.804
rpoN
Candidate RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.790
Rta_37870
Conserved hypothetical protein.
  
     0.761
Rta_36570
Conserved hypothetical protein.
  
     0.728
Rta_12810
Candidate membrane protein.
  
     0.718
Rta_36560
Conserved hypothetical protein.
  
     0.684
Rta_35020
Conserved hypothetical protein.
  
     0.679
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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