Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_03030Conserved hypothetical protein. (233 aa)    
Predicted Functional Partners:
Rta_03020
ABC transporter periplasmic component-like protein.
 
   0.982
Rta_03010
Candidate ABC transporter, ATP-binding component.
 
    0.924
Rta_03000
Candidate ABC transporter, permease component.
 
  
 0.919
Rta_03040
Signal transduction protein : sensor, cNMP-binding domain-like protein.
       0.718
Rta_34580
Hypothetical protein.
 
   0.655
Rta_27060
Conserved hypothetical protein.
  
     0.575
Rta_11820
Conserved hypothetical protein.
  
     0.572
hc2x
Candidate histone H1 protein.
  
     0.564
Rta_30640
Conserved hypothetical protein.
  
     0.532
Rta_05290
Protein-disulfide reductase (thioredoxin)-like protein.
  
     0.516
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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