Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_03070Conserved hypothetical protein. (155 aa)    
Predicted Functional Partners:
Rta_03080
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
  
 0.830
katE
Candidate hydroperoxidase II.
   
 0.605
katE-3
Candidate hydroperoxidase II; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.605
Rta_09140
Unsaturated acyl-CoA hydratase.
  
 0.599
Rta_20050
3-hydroxybutyryl-CoA epimerase-like protein.
  
 0.599
Rta_30410
Polyketide synthase-like protein.
  
 0.580
Rta_06380
Hydroxyperoxidase II-like protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.577
katE-2
Candidate hydroperoxidase II.
   
 0.577
Rta_03090
Candidate carboxymethylenebutenolidase (dienelactone hydrolase).
  
  
 0.569
Rta_31740
acyl-CoA dehydrogenase-like protein.
 
 0.523
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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