Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_03160Candidate membrane protein. (142 aa)    
Predicted Functional Partners:
hemH
Heme synthetase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
  
 0.947
hemF
Coprogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
  
 0.947
Rta_03190
Conserved hypothetical protein.
 
     0.891
Rta_03170
Candidate membrane protein.
       0.828
Rta_03180
Candidate Ferredoxin, 2Fe-2S.
       0.820
dac
Candidate penicillin-binding protein precursor (D-alanyl-D-alanine carboxypeptidase); Belongs to the peptidase S11 family.
 
     0.703
hemB
Candidate Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
     
 0.666
Rta_02920
Candidate Cytochrome c.
  
     0.511
Rta_16860
Hypothetical protein.
  
     0.510
corA-2
Candidate Mg2+ and Co2+ transporter.
  
    0.508
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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