Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_03190Conserved hypothetical protein. (208 aa)    
Predicted Functional Partners:
Rta_03160
Candidate membrane protein.
 
     0.891
Rta_03180
Candidate Ferredoxin, 2Fe-2S.
 
     0.841
Rta_03170
Candidate membrane protein.
       0.828
dac
Candidate penicillin-binding protein precursor (D-alanyl-D-alanine carboxypeptidase); Belongs to the peptidase S11 family.
 
     0.761
Rta_02410
Conserved hypothetical protein.
  
     0.525
hemB
Candidate Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.503
Rta_27870
Conserved hypothetical protein.
 
     0.503
corA-2
Candidate Mg2+ and Co2+ transporter.
       0.500
trpS
Candidate tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase); Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.484
Rta_35280
Ubiquinone biosynthesis protein COQ7-like protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
 
     0.433
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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