Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_03400Thiol-disulfide oxidoreductase-like protein. (161 aa)    
Predicted Functional Partners:
Rta_07890
Cytochrome c biogenesis protein, membrane protein-like protein.
 
  
 0.741
Rta_07900
Cytochrome c biogenesis protein, membrane protein-like protein.
 
  
 0.710
Rta_26290
Conserved hypothetical protein.
  
     0.704
tmk
Candidate thymidylate kinase (dTMP kinase); Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.621
Rta_03410
Conserved hypothetical protein.
  
  
 0.552
Rta_03420
Conserved hypothetical protein; Belongs to the CoA-transferase III family.
       0.547
Rta_03460
Candidate PTS system, enzyme I component; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
  
    0.503
Rta_03450
Candidate PTS system, HPr-like protein.
  
    0.490
Rta_03440
Candidate PTS system, enzyme IIA mannose.
       0.488
Rta_33700
Conserved hypothetical protein.
  
     0.467
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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