Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rta_03420Conserved hypothetical protein; Belongs to the CoA-transferase III family. (411 aa)    
Predicted Functional Partners:
gcdH-2
Candidate glutaryl-CoA dehydrogenase.
 
 
  0.929
gcdH
Candidate glutaryl-CoA dehydrogenase.
 
 
  0.928
gabD
Candidate succinate-semialdehyde dehydrogenase (NADP+).
    
  0.900
sucB
Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
     
  0.900
Rta_03410
Conserved hypothetical protein.
    
  0.797
Rta_03430
Candidate transporter.
       0.558
Rta_03440
Candidate PTS system, enzyme IIA mannose.
       0.558
Rta_03450
Candidate PTS system, HPr-like protein.
       0.558
Rta_03460
Candidate PTS system, enzyme I component; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
       0.558
Rta_03400
Thiol-disulfide oxidoreductase-like protein.
       0.547
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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