Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_03690Candidate Xanthine dehydrogenase, iron-sulfur binding subunit. (212 aa)    
Predicted Functional Partners:
Rta_03670
Candidate Xanthine dehydrogenase.
 
 0.997
Rta_01170
Candidate Carbon monoxide dehydrogenase large chain.
 
 0.985
yagR
Candidate Xanthine dehydrogenase yagR, molybdenum binding subunit.
 
 0.985
Rta_03680
Candidate Xanthine dehydrogenase, FAD binding subunit.
 
 
 0.945
Rta_32390
Candidate xanthine dehydrogenase large subunit.
 
     0.944
Rta_13380
Candidate carbon monoxide dehydrogenase large chain.
 
 0.940
Rta_00250
Xanthine dehydrogenase-like protein.
 
 0.923
guaD
Candidate guanine deaminase (Guanase); Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
  
 
 0.910
add
Candidate adenosine deaminase (Adenosine aminohydrolase); Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
    
  0.902
ppnP
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.900
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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