Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_03900Candidate ABC transporter, periplasmic component, uncharacterized transport function. (415 aa)    
Predicted Functional Partners:
Rta_03910
Putative thiamine transport system permease protein; Candidate ABC transporter, permease component with duplicated permease domains, uncharacterized transport function.
 
  
 0.923
Rta_03920
Candidate ABC transporter, ATP-binding component, uncharacterized transport function.
 
   
 0.907
xthC
Candidate exodeoxyribonuclease III.
       0.625
Rta_03980
Candidate mercuric reductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
  
 0.566
pyrE
Candidate Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.459
Rta_03950
Hypothetical protein.
 
     0.443
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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