Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_03950Hypothetical protein. (356 aa)    
Predicted Functional Partners:
Rta_03940
Candidate b-glycosyltransferase, Glycosyltransferase Family 2.
 
     0.777
Rta_03930
Conserved hypothetical protein.
       0.634
Rta_22830
Candidate outer membrane protein.
  
     0.609
Rta_22810
Conserved hypothetical protein.
  
   
 0.590
Rta_36290
Hypothetical protein.
  
     0.574
Rta_03910
Putative thiamine transport system permease protein; Candidate ABC transporter, permease component with duplicated permease domains, uncharacterized transport function.
 
     0.548
Rta_03980
Candidate mercuric reductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
     0.526
Rta_01670
Candidate transporter.
  
    0.525
Rta_22800
Candidate membrane protein.
  
   
 0.508
Rta_03960
Transcriptional regulator, AraC family-like protein.
  
    0.506
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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