Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_04050Transcriptional regulator, AraC family-like protein. (305 aa)    
Predicted Functional Partners:
Rta_04060
Phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
       0.773
Rta_00580
Transcriptional regulator, AraC family-like protein.
  
     0.735
Rta_27500
Transcriptional regulator, AraC family-like protein.
  
     0.710
Rta_04030
Transcriptional regulator, DeoR family-like protein.
 
     0.538
Rta_04070
Conserved hypothetical protein.
       0.513
Rta_04040
Hydrolase-like protein.
 
     0.507
Rta_02160
Transcriptional regulator, AraC family-like protein.
  
     0.457
Rta_19230
Bifunctional protein : transcriptional regulator, MarR family; N-acetyltransferase-like protein.
  
  
 0.435
Rta_10950
DNA-3-methyladenine-glycosylase II-like protein; Fusion protein AdaA/AlkA : methylphosphotriester-DNA alkyltransferase and transcriptional regulator, AraC family; DNA-3-methyladenine- glycosylase II-like protein.
 
   
 0.412
Rta_26040
Transcriptional regulator, XRE family-like protein.
  
    0.410
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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