Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_04060Phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. (420 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
  
  
 0.918
pssA
Candidate Phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
  0.911
Rta_17000
Phospholipid N-methyltransferase-like protein.
     
  0.900
pssA-2
Candidate Phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase)(Phosphatidylserine synthase)(CDP-diglycerine-serine O-phosphatidyltransferase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
  0.900
Rta_04050
Transcriptional regulator, AraC family-like protein.
       0.773
omp85
Candidate Outer membrane protein insertion machinery protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.754
Rta_04200
Candidate response regulator, CheY.
  
     0.623
Rta_04070
Conserved hypothetical protein.
       0.513
Rta_37670
ProP effector-like protein.
  
     0.495
bamE
Outer membrane lipoprotein omlA precursor-like protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.492
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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