Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_04310(FDH) (FALDH). (383 aa)    
Predicted Functional Partners:
Rta_04300
Hypothetical protein.
 
     0.939
Rta_04290
Candidate membrane protein.
       0.649
Rta_06430
Hypothetical protein.
  
     0.612
Rta_04320
Candidate Arginase; Belongs to the arginase family.
     
 0.573
Rta_01040
Esterase, Carbohydrate Esterase Family 1-like protein; Serine hydrolase involved in the detoxification of formaldehyde.
  
 
 0.552
Rta_03060
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
 
     0.506
Rta_04580
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
 
     0.504
Rta_16810
B-xylosidase/arabinofuranosidase, Glycoside Hydrolase Family 43-like protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.495
Rta_11160
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
 
    0.488
Rta_27460
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
 
    0.486
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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