Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_04490Candidate membrane protein. (102 aa)    
Predicted Functional Partners:
Rta_04500
Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.
 
    0.953
Rta_04510
Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.
 
    0.952
Rta_04520
Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.
 
    0.951
Rta_04530
Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.
 
    0.950
Rta_04480
Glycerol transport system substrate-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, periplasmic component.
 
     0.913
glpD
Candidate Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.756
glpR
Candidate transcriptional regulator GlpR (Glycerol-3-phosphate regulon repressor), DeoR family.
 
     0.741
glpK
ATP:glycerol 3-phosphotransferase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
    0.570
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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