Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilUCandidate type 4 fimbrial assembly protein pilU, putative traffic ATPase. (378 aa)    
Predicted Functional Partners:
pilT
Candidate type 4 fimbrial assembly protein pilT, putative traffic ATPase.
 
  
0.826
pilM
Candidate type IV pilus assembly protein.
  
  
 0.807
pilC
Candidate type 4 fimbrial assembly protein pilC, gspF family.
 
   
 0.791
pilD
Candidate type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.779
gspF
Candidate general secretion pathway protein F.
 
   
 0.778
gspF-2
Candidate general secretion pathway protein F, component of type II secretion system.
 
   
 0.741
pilQ
Candidate Fimbrial assembly protein pilQ precursor, secretin family.
  
  
 0.685
pilO
Candidate Tfp pilus assembly protein PilO.
 
  
 0.654
pilN
Candidate Tfp pilus assembly protein PilN.
  
  
 0.612
Rta_04720
Conserved hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.601
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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