Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Rta_04790Periplasmic protein-like protein. (222 aa)    
Predicted Functional Partners:
gmhA
Candidate Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
    0.881
Rta_28090
Succinate dehydrogenase hydrophobic membrane anchor protein-like protein.
  
     0.628
Rta_25710
Conserved hypothetical protein.
  
  
 0.608
Rta_28080
Succinate dehydrogenase cytochrome b-556 subunit-like protein.
  
     0.584
Rta_30280
Stress response protein csbD-like protein; Belongs to the UPF0337 (CsbD) family.
 
    0.571
Rta_35650
Conserved hypothetical protein.
  
     0.541
Rta_08160
Conserved hypothetical protein.
  
    0.521
Rta_30860
Conserved hypothetical protein.
  
    0.499
sspA
Candidate Stringent starvation protein A.
  
  
 0.458
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
    0.454
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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