Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Rta_04820Conserved hypothetical protein. (95 aa)    
Predicted Functional Partners:
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
  
 0.970
ctaC
Candidate Cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2).
   
   0.903
Rta_30410
Polyketide synthase-like protein.
 
 
 0.885
Rta_04840
Polyketide synthase protein-like protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.872
fabD
Candidate [Acyl-carrier-protein] S-malonyltransferase.
  
 0.859
ctaD
Candidate Cytochrome c oxidase polypeptide I (Cytochrome AA3 subunit 1).
    
 
 0.841
Rta_04860
acyl-CoA ligase (acyl-CoA synthetase)-like protein.
 
 
 0.828
nuoC
Candidate NADH:ubiquinone oxidoreductase subunit 5 or 30 kDa subunit, chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
   
 0.823
rplU
Candidate 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 0.820
rplM
Candidate 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
  0.782
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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