| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rta_04970 | rsmI | Rta_04970 | Rta_04980 | Conserved hypothetical protein; Belongs to the UPF0102 family. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.630 |
| ftsZ | rpsF | Rta_09750 | Rta_24130 | Candidate cell division tubulin-like GTPase; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | Candidate 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.508 |
| ftsZ | rpsQ | Rta_09750 | Rta_03350 | Candidate cell division tubulin-like GTPase; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | Candidate 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.403 |
| ftsZ | rsmI | Rta_09750 | Rta_04980 | Candidate cell division tubulin-like GTPase; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.514 |
| rpsB | rpsD | Rta_17430 | Rta_36060 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.995 |
| rpsB | rpsF | Rta_17430 | Rta_24130 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Candidate 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.996 |
| rpsB | rpsG | Rta_17430 | Rta_03220 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Candidate 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.996 |
| rpsB | rpsN | Rta_17430 | Rta_36180 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Candidate 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.992 |
| rpsB | rpsO | Rta_17430 | Rta_26480 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Candidate 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.996 |
| rpsB | rpsP | Rta_17430 | Rta_12100 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Candidate 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.993 |
| rpsB | rpsQ | Rta_17430 | Rta_03350 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Candidate 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.996 |
| rpsB | rsmI | Rta_17430 | Rta_04980 | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.572 |
| rpsD | rpsB | Rta_36060 | Rta_17430 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.995 |
| rpsD | rpsF | Rta_36060 | Rta_24130 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Candidate 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.985 |
| rpsD | rpsG | Rta_36060 | Rta_03220 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Candidate 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.996 |
| rpsD | rpsN | Rta_36060 | Rta_36180 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Candidate 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.994 |
| rpsD | rpsO | Rta_36060 | Rta_26480 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Candidate 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.991 |
| rpsD | rpsP | Rta_36060 | Rta_12100 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Candidate 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.987 |
| rpsD | rpsQ | Rta_36060 | Rta_03350 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Candidate 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.996 |
| rpsD | rsmI | Rta_36060 | Rta_04980 | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.559 |
