Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_05020Candidate b-glycosidase, Glycoside Hydrolase Family 2; Belongs to the glycosyl hydrolase 2 family. (593 aa)    
Predicted Functional Partners:
galK
Candidate galactokinase (Galactose kinase); Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.963
Rta_05030
Gal-1-P uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
 
   
 0.936
Rta_05050
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
   
 0.781
Rta_16810
B-xylosidase/arabinofuranosidase, Glycoside Hydrolase Family 43-like protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.773
Rta_03060
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
 
   
 0.752
Rta_32800
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
  
     0.727
Rta_04580
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
 
   
 0.600
Rta_17710
Conserved hypothetical protein.
  
    0.585
glf
Candidate UDP-galactopyranose mutase.
 
   
 0.531
Rta_30970
Arylsulfatase precursor-like protein.
 
 
 
 0.511
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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