Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_05030Gal-1-P uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family. (362 aa)    
Predicted Functional Partners:
galK
Candidate galactokinase (Galactose kinase); Belongs to the GHMP kinase family. GalK subfamily.
 0.999
galE
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 0.986
galE-2
UDP- galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 0.986
Rta_05020
Candidate b-glycosidase, Glycoside Hydrolase Family 2; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.936
glf
Candidate UDP-galactopyranose mutase.
 
  
  0.928
galU
Candidate UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase); (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase).
     
 0.910
ugd
Candidate UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase).
    
 0.834
rfbB
Candidate dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
   
  
 0.656
Rta_17720
Conserved hypothetical protein.
  
 
 0.619
Rta_03060
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
 
   
 0.567
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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