Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_05080Thiol:disulfide reductase (thiol:disulfide interchange protein)-like protein. (696 aa)    
Predicted Functional Partners:
Rta_05070
Periplasmic/membrane thiol peroxidase-like protein.
 
   
 0.937
Rta_09970
Candidate thioredoxin-like protein.
  
 
 0.889
Rta_30710
Thioredoxin-like protein.
  
 
 0.889
msrB
Candidate peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase); Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.794
msrA
Candidate peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.774
Rta_13770
Conserved hypothetical protein.
  
 
 0.721
rsfS
Conserved hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
    0.656
Rta_05090
Conserved hypothetical protein.
       0.636
dsbA
Candidate disulfide oxidoreductase.
  
 
 0.579
dsbG
Candidate Thiol:disulfide interchange protein dsbG precursor.
  
 
 0.579
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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