Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_05230Candidate 2-dehydro-3-deoxygluconokinase. (316 aa)    
Predicted Functional Partners:
tkrA
Candidate Gluconate 2-dehydrogenase (2-ketogluconate reductase); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.988
Rta_05220
Conserved hypothetical protein.
  
 0.976
tkrA-2
Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.936
Rta_06290
Conserved hypothetical protein.
   
 
 0.911
Rta_11590
Conserved hypothetical protein.
   
 
 0.911
Rta_06280
Candidate oxidoreductase.
   
 
 0.908
Rta_11600
Choline dehydrogenase and related flavoprotein-like protein.
   
 
 0.908
Rta_05170
Transcriptional regulator, LacI family-like protein.
 
  
 0.852
Rta_05210
Candidate ABC type amino acid transport system, ATP-binding component.
  
    0.782
Rta_05200
Candidate ABC type amino acid transport system, periplasmic component.
       0.709
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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