Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_05250Creatinine amidohydrolase (Creatininase)-like protein. (250 aa)    
Predicted Functional Partners:
codA
Candidate cytosine deaminase (Cytosine aminohydrolase).
 
  
 0.923
Rta_23350
Candidate processive b-glycan synthase, Glycosyltransferase Family 2.
  
  
 0.767
Rta_05220
Conserved hypothetical protein.
       0.487
Rta_05230
Candidate 2-dehydro-3-deoxygluconokinase.
       0.487
Rta_05210
Candidate ABC type amino acid transport system, ATP-binding component.
       0.475
tkrA
Candidate Gluconate 2-dehydrogenase (2-ketogluconate reductase); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.475
Rta_05260
Conserved hypothetical protein.
       0.471
Rta_05200
Candidate ABC type amino acid transport system, periplasmic component.
       0.441
Rta_05270
Conserved hypothetical protein; Belongs to the radical SAM superfamily. RlmN family.
       0.415
Rta_09470
Conserved hypothetical protein.
  
     0.413
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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