Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_05450long-chain-fatty-acid--CoA ligase-like protein. (561 aa)    
Predicted Functional Partners:
Rta_30410
Polyketide synthase-like protein.
  
 0.951
Rta_04180
4-coumarate--CoA ligase (4-coumaroyl-CoA synthase)-like protein.
  
  
 
0.851
Rta_34930
long-chain-fatty-acid--CoA ligase-like protein.
  
 
0.823
Rta_02130
long-chain-fatty-acid--CoA ligase-like protein.
  
  
 
0.806
Rta_36350
1-acylglycerol-3-phosphate O-acyltransferase-like protein.
 
 0.730
Rta_04840
Polyketide synthase protein-like protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.712
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
    
 
 0.621
Rta_05460
Lipase-like protein.
     
 0.536
rplF
Candidate 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.519
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
  
  
 0.509
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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