Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_05480Transcriptional regulator, CRP family-like protein. (219 aa)    
Predicted Functional Partners:
Rta_22060
Transcriptional regulator, CRP family-like protein.
  
  
  0.975
Rta_03040
Signal transduction protein : sensor, cNMP-binding domain-like protein.
  
  
  0.955
Rta_38190
Signal transduction protein : sensor, cNMP-binding domain-like protein.
  
  
 0.927
Rta_34920
Transcriptional regulator, CRP family-like protein.
  
  
 0.923
Rta_31660
Transcriptional regulator, CRP family-like protein.
  
  
 
0.919
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.721
rpoD
Candidate RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.702
Rta_05470
Transcriptional regulator, LuxR family-like protein.
     
 0.622
Rta_19460
Candidate histidine kinase, atypical hybrid.
   
 
 0.573
Rta_17850
Adenylyl cyclase.
 
 
 0.545
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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