Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_05530Mg2+/Co2+ transporter CorC-like protein. (296 aa)    
Predicted Functional Partners:
lnt
Candidate apolipoprotein N-acyltransferase (ALP N-acyltransferase), membrane protein; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
    0.914
glyQ
Candidate Glycine--tRNA ligase alpha chain (Glycyl-tRNA synthetase alpha chain).
       0.820
glyS
Candidate glycine--tRNA ligase beta chain (Glycyl-tRNA synthetase beta chain).
       0.820
Rta_05570
Histidinol phosphatase-like protein.
       0.820
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.792
plsC
Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase).
 
     0.750
Rta_05590
Conserved hypothetical protein.
       0.708
Rta_05520
Conserved hypothetical protein.
       0.583
Rta_05600
Candidate histidine kinase, classic.
 
     0.535
Rta_28730
Candidate membrane protein.
 
    
 0.481
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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