Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_05570Histidinol phosphatase-like protein. (185 aa)    
Predicted Functional Partners:
Rta_37130
Candidate Aut protein (necessary for autotrophic growth); Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
  
 0.997
gmhA
Candidate Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.995
Rta_13600
ADP-heptose synthase-like protein.
 
  
 0.981
Rta_01890
Candidate LPS heptosyltransferase, Glycosyltransferase Family 9.
   
 0.944
glyQ
Candidate Glycine--tRNA ligase alpha chain (Glycyl-tRNA synthetase alpha chain).
       0.835
glyS
Candidate glycine--tRNA ligase beta chain (Glycyl-tRNA synthetase beta chain).
       0.835
lnt
Candidate apolipoprotein N-acyltransferase (ALP N-acyltransferase), membrane protein; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
    0.826
Rta_05530
Mg2+/Co2+ transporter CorC-like protein.
       0.820
plsC
Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase).
 
  
 0.795
Rta_05590
Conserved hypothetical protein.
  
   0.765
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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