Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Rta_05630Conserved hypothetical protein. (128 aa)    
Predicted Functional Partners:
Rta_36660
Conserved hypothetical protein.
  
     0.712
Rta_05640
Candidate Isovaleryl-CoA dehydrogenase.
  
    0.711
Rta_34930
long-chain-fatty-acid--CoA ligase-like protein.
 
   
 0.652
Rta_05620
Transcriptional regulator, MerR family-like protein.
       0.618
Rta_34970
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
  
     0.605
cynT
Candidate carbonate dehydratase (Carbonic anhydrase); Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.576
Rta_34990
Phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase)-like protein.
 
  
 0.573
Rta_20000
Conserved hypothetical protein.
  
     0.547
aceK
Candidate [Isocitrate dehydrogenase (NADP(+))] kinase (Isocitrate dehydrogenase kinase/phosphatase); Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.
       0.535
Rta_05670
Hypothetical protein.
       0.509
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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