Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cynTCandidate carbonate dehydratase (Carbonic anhydrase); Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (219 aa)    
Predicted Functional Partners:
Rta_25870
Conserved hypothetical protein.
    
 
 0.826
aceK
Candidate [Isocitrate dehydrogenase (NADP(+))] kinase (Isocitrate dehydrogenase kinase/phosphatase); Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.
       0.768
Rta_05670
Hypothetical protein.
       0.695
Rta_05680
Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.
       0.665
Rta_05690
Oxidoreductases-like protein.
       0.649
Rta_03370
Conserved hypothetical protein.
 
      0.646
pyrR
Candidate bifunctional protein : Pyrimidine operon attenuation regulatory protein; Uracil phosphoribosyltransferase.
   
  
 0.633
otsB
Candidate trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
     
 0.629
phoD
Candidate alkaline phosphatase D precursor.
      
 0.624
Rta_05640
Candidate Isovaleryl-CoA dehydrogenase.
     
 0.619
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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