Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_05890Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
Rta_24820
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.636
Rta_27100
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.621
Rta_01100
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.609
ttuC
Candidate Tartrate dehydrogenase.
       0.546
cysB
Candidate transcriptional regulator CysB (Cys regulon transcriptional activator), LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.526
Rta_05900
Ribosomal large subunit pseudouridine synthase (rRNA pseudouridylate synthase)-like protein.
       0.493
tctC-9
Candidate extracytoplasmic binding receptor.
       0.458
Rta_09350
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.452
oxyR
Candidate transcriptional regulator OxyR; Hydrogen peroxide-inducible genes activator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.404
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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