Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_06000Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
Rta_01910
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.771
Rta_01100
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.720
Rta_13890
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.570
Rta_18570
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.549
Rta_05980
3-hydroxybutyryl-CoA dehydratase (Crotonase)-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.543
Rta_05990
Formyl-CoA transferase (Formyl-CoA oxalate CoA-transferase)-like protein; Belongs to the CoA-transferase III family.
       0.543
Rta_05970
NADPH:quinone reductase (Quinone oxidoreductase)-like protein.
       0.540
tctC-11
Candidate extracytoplasmic binding receptor.
       0.479
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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