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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_06170Candidate multisubunit Na+/H+ antiporter, MnhF subunit. (93 aa)    
Predicted Functional Partners:
Rta_06140
Candidate multisubunit Na+/H+ antiporter, MnhC subunit.
 
 
 0.998
Rta_06160
Candidate ultisubunit Na+/H+ antiporter, MnhE subunit.
 
 
 0.998
Rta_06180
Candidate multisubunit Na+/H+ antiporter, MnhG subunit.
 
 
 0.998
Rta_06130
Candidate NADH:ubiquinone oxidoreductase subunit 5, chain L.
 
 
 0.997
Rta_06150
Candidate formate hydrogenlyase, MnhD subunit.
 
 
 0.997
nuoL
Candidate NADH:ubiquinone oxidoreductase subunit 12 or 5, chain L.
  
 
 0.804
nuoD
Candidate NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa subunit, chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
   0.400
nuoC
Candidate NADH:ubiquinone oxidoreductase subunit 5 or 30 kDa subunit, chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
   
   0.400
nuoB
Candidate NADH:ubiquinone oxidoreductase subunit 6 or 20 kDa subunit, chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
   0.400
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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