Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Rta_06360Conserved hypothetical protein. (389 aa)    
Predicted Functional Partners:
katE
Candidate hydroperoxidase II.
   
 
 0.831
katE-3
Candidate hydroperoxidase II; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 
 0.831
Rta_03360
Conserved hypothetical protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
   
 0.769
ahpF
Candidate alkyl hydroperoxide reductase F component.
  
  
 0.750
Rta_06380
Hydroxyperoxidase II-like protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
 
 0.742
Rta_06370
Conserved hypothetical protein.
  
    0.689
Rta_09970
Candidate thioredoxin-like protein.
  
 0.627
Rta_30710
Thioredoxin-like protein.
  
 0.627
Rta_13770
Conserved hypothetical protein.
  
 0.613
Rta_13470
Bifunctional protein : sensor, cNMP-binding domain-like protein.
  
 
 0.606
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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