Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_06430Hypothetical protein. (114 aa)    
Predicted Functional Partners:
Rta_06440
Conserved hypothetical protein.
       0.661
Rta_04310
(FDH) (FALDH).
  
     0.612
Rta_37620
Cytochromes P450-like protein.
  
     0.537
Rta_16140
Conserved hypothetical protein.
  
   
 0.517
Rta_28890
Candidate cation transport ATPase.
 
   
 0.511
Rta_37840
Candidate membrane protein.
  
     0.508
Rta_06420
DnaK suppressor protein-like protein.
       0.505
Rta_01000
Candidate membrane protein.
  
     0.494
Rta_04300
Hypothetical protein.
  
     0.474
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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