Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Rta_06600Transcriptional regulator, AraC family-like protein. (309 aa)    
Predicted Functional Partners:
Rta_06610
Candidate Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
       0.509
Rta_10950
DNA-3-methyladenine-glycosylase II-like protein; Fusion protein AdaA/AlkA : methylphosphotriester-DNA alkyltransferase and transcriptional regulator, AraC family; DNA-3-methyladenine- glycosylase II-like protein.
 
   
 0.432
Rta_06620
Candidate Long chain acyl-CoA dehydrogenase.
       0.426
Rta_06690
2-hydroxychromene-2-carboxylate isomerase-like protein.
 
     0.421
Rta_06640
Candidate membrane protein.
  
  
 0.412
Rta_06630
Unsaturated acyl-CoA hydratase.
       0.403
Rta_06650
Candidate Acetyl/propionyl-CoA carboxylase, alpha subunit.
       0.403
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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