Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_06640Candidate membrane protein. (212 aa)    
Predicted Functional Partners:
Rta_06650
Candidate Acetyl/propionyl-CoA carboxylase, alpha subunit.
       0.829
Rta_06630
Unsaturated acyl-CoA hydratase.
       0.792
iscS
Candidate cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
  
 0.736
Rta_06620
Candidate Long chain acyl-CoA dehydrogenase.
       0.723
Rta_06660
D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein.
       0.694
Rta_06610
Candidate Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
       0.612
Rta_06670
Candidate Hydroxymethylglutaryl-CoA lyase.
       0.577
Rta_06680
Conserved hypothetical protein.
       0.549
iscU
Candidate Fe-S cluster assembly protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
  
 0.522
Rta_06600
Transcriptional regulator, AraC family-like protein.
  
  
 0.412
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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