Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_06680Conserved hypothetical protein. (169 aa)    
Predicted Functional Partners:
Rta_06670
Candidate Hydroxymethylglutaryl-CoA lyase.
       0.759
Rta_06660
D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein.
       0.655
Rta_06630
Unsaturated acyl-CoA hydratase.
 
    0.601
Rta_06640
Candidate membrane protein.
       0.549
Rta_06650
Candidate Acetyl/propionyl-CoA carboxylase, alpha subunit.
       0.549
Rta_06690
2-hydroxychromene-2-carboxylate isomerase-like protein.
       0.523
Rta_06620
Candidate Long chain acyl-CoA dehydrogenase.
       0.505
Rta_06610
Candidate Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
       0.430
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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