Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_06740Candidate endo-1,4-glucanase, Glycoside Hydrolase Family 5. (824 aa)    
Predicted Functional Partners:
Rta_06220
Candidate b-glucosidase, Glycoside Hydrolase Family 3.
 
  
 0.921
Rta_10360
Candidate endo-1,4-glucanase, Glycoside Hydrolase Family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 
0.913
Rta_16710
Acetohydroxy-acid synthase small subunit; Belongs to the TPP enzyme family.
  
     0.552
Rta_06750
Candidate transporter.
       0.499
Rta_07570
Hypothetical protein.
  
     0.489
uvrA2
Candidate excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.465
Rta_09490
Conserved hypothetical protein.
  
     0.417
Rta_27950
Salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein.
  
     0.415
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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