Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_06865Phosphomannomutase/phosphoglucomutase-like protein. (460 aa)    
Predicted Functional Partners:
Rta_03440
Candidate PTS system, enzyme IIA mannose.
    
 0.906
Rta_10960
Phosphomannomutase/phosphoglucomutase-like protein.
  
  
 
0.901
galU
Candidate UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase); (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase).
  
 0.757
Rta_06870
Hypothetical protein.
       0.664
Rta_06880
ATP-dependent DNA ligase-like protein.
       0.551
Rta_05030
Gal-1-P uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
    
 0.550
Rta_37790
Nucleotidyltransferases-like protein.
 
  
 0.465
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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