Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
paaCCandidate Phenylacetic acid degradation protein. (264 aa)    
Predicted Functional Partners:
paaB
Candidate Phenylacetic acid degradation protein.
 
 0.999
paaA
Candidate Phenylacetic acid degradation protein.
 0.999
paaD
Candidate Phenylacetic acid degradation protein.
 
 
 0.998
Rta_06950
Ferredoxin--NAD(+) reductase-like protein.
 
 0.997
paaI
Candidate phenylacetic acid degradation protein.
 
 
 0.990
Rta_34360
Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.964
paaK
Candidate phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase); Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.956
rlmJ
Conserved hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.676
Rta_22040
3-hydroxybutyryl-CoA dehydrogenase (Beta- hydroxybutyryl-CoA dehydrogenase)-like protein.
  
  
 0.563
Rta_06940
Conserved hypothetical protein.
       0.539
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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