Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_07030Conserved hypothetical protein. (235 aa)    
Predicted Functional Partners:
Rta_07040
Candidate Integral membrane protein CcmA.
 
    0.894
Rta_07520
Conserved hypothetical protein.
  
     0.663
erpA
Candidate Fe-S protein; Required for insertion of 4Fe-4S clusters.
  
    0.640
Rta_08470
Conserved hypothetical protein.
  
     0.623
rpsI
Candidate 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.582
rplM
Candidate 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.573
Rta_11570
Conserved hypothetical protein.
  
     0.568
Rta_36950
Conserved hypothetical protein.
  
     0.506
Rta_02200
Esterase of the alpha-beta hydrolase superfamily-like protein.
  
     0.493
Rta_36290
Hypothetical protein.
  
     0.486
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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